smriprep.interfaces.reports module

Interfaces to generate reportlets.

class smriprep.interfaces.reports.AboutSummary(from_file=None, resource_monitor=None, **inputs)[source]

Bases: SummaryInterface

About section reportlet.

Optional Inputs:

  • command (a string) – SMRIPrep command.

  • version (a string) – SMRIPrep version.

Outputs:

out_report (a pathlike object or string representing an existing file) – HTML segment containing summary.

class smriprep.interfaces.reports.FSSurfaceReport(from_file=None, resource_monitor=None, **inputs)[source]

Bases: SimpleInterface

Replaces ReconAllRPT, without need of calling recon-all.

Mandatory Inputs:

  • subject_id (a string) – Subject name for whom to retrieve data.

  • subjects_dir (a pathlike object or string representing an existing directory) – Freesurfer subjects directory.

Optional Inputs:

  • compress_report (‘auto’ or True or False) – Compress the reportlet using SVGO orWEBP. ‘auto’ - compress if relevant software is installed, True = force,False - don’t attempt to compress. (Nipype default value: auto)

  • hemi (‘both’ or ‘lh’ or ‘rh’) – Selects hemisphere specific outputs. (Nipype default value: both)

  • out_report (a pathlike object or string representing a file) – Filename for the visual report. (Nipype default value: report.svg)

Outputs:

out_report (a pathlike object or string representing a file) – Filename for the visual report.

class smriprep.interfaces.reports.SubjectSummary(from_file=None, resource_monitor=None, **inputs)[source]

Bases: SummaryInterface

Subject html summary reportlet.

Optional Inputs:

  • output_spaces (a list of items which are a string) – List of standard spaces.

  • subject_id (a string) – Subject ID.

  • subjects_dir (a pathlike object or string representing a directory) – FreeSurfer subjects directory.

  • t1w (a list of items which are a pathlike object or string representing an existing file) – T1w structural images.

  • t2w (a list of items which are a pathlike object or string representing an existing file) – T2w structural images.

Outputs:

  • out_report (a pathlike object or string representing an existing file) – HTML segment containing summary.

  • subject_id (a string) – FreeSurfer subject ID.

class smriprep.interfaces.reports.SummaryInterface(from_file=None, resource_monitor=None, **inputs)[source]

Bases: SimpleInterface

Base Nipype interface for html summaries.

Outputs:

out_report (a pathlike object or string representing an existing file) – HTML segment containing summary.