Index

A

AboutSummary (class in dmriprep.interfaces.reports) affine() (dmriprep.utils.vectors.DiffusionGradientTable property)

anat_derivatives (dmriprep.config.execution attribute), [1] anat_only (dmriprep.config.workflow attribute), [1]

B

b0mask() (dmriprep.utils.vectors.DiffusionGradientTable property) b0mask_from_data() (in module dmriprep.utils.vectors) bids_description_hash (dmriprep.config.execution attribute), [1] bids_dir (dmriprep.config.execution attribute), [1] bids_filters (dmriprep.config.execution attribute), [1]

BIDSDataGrabber (class in dmriprep.interfaces) boilerplate_only (dmriprep.config.execution attribute), [1] bvals() (dmriprep.utils.vectors.DiffusionGradientTable property) bvecs() (dmriprep.utils.vectors.DiffusionGradientTable property) bvecs2ras() (in module dmriprep.utils.vectors)

C

calculate_pole() (in module dmriprep.utils.vectors) check_deps() (in module dmriprep.utils.misc) CheckGradientTable (class in dmriprep.interfaces.vectors)

cli (dmriprep.config.loggers attribute), [1] collect_data() (in module dmriprep.utils.bids) cpu_count (dmriprep.config.environment attribute), [1] crashfile_format (dmriprep.config.nipype attribute), [1]

D

debug (dmriprep.config.execution attribute), [1] default (dmriprep.config.loggers attribute), [1] DerivativesDataSink (class in dmriprep.interfaces) DiffusionGradientTable (class in dmriprep.utils.vectors) dmriprep.config (module) dmriprep.interfaces (module) dmriprep.interfaces.images (module) dmriprep.interfaces.reports (module) dmriprep.interfaces.vectors (module) dmriprep.utils (module) dmriprep.utils.bids (module)

dmriprep.utils.images (module) dmriprep.utils.misc (module) dmriprep.utils.vectors (module) dmriprep.workflows (module) dmriprep.workflows.base (module) dmriprep.workflows.dwi (module) dmriprep.workflows.dwi.base (module) dmriprep.workflows.dwi.eddy (module) dmriprep.workflows.dwi.outputs (module) dumps() (in module dmriprep.config) dwi2t1w_init (dmriprep.config.workflow attribute), [1]

E

environment (class in dmriprep.config), [1] exec_docker_version (dmriprep.config.environment attribute), [1] exec_env (dmriprep.config.environment attribute), [1]

execution (class in dmriprep.config), [1] extract_b0() (in module dmriprep.utils.images) ExtractB0 (class in dmriprep.interfaces.images)

F

fmap_bspline (dmriprep.config.workflow attribute), [1] fmap_demean (dmriprep.config.workflow attribute), [1] force_syn (dmriprep.config.workflow attribute), [1]

free_mem (dmriprep.config.environment attribute), [1] from_dict() (in module dmriprep.config) fs_license_file (dmriprep.config.execution attribute), [1] fs_subjects_dir (dmriprep.config.execution attribute), [1]

G

gen_eddy_textfiles() (in module dmriprep.workflows.dwi.eddy) generate_rasb() (dmriprep.utils.vectors.DiffusionGradientTable method) generate_vecval() (dmriprep.utils.vectors.DiffusionGradientTable method)

get() (in module dmriprep.config) get_linked_libs (dmriprep.config.nipype attribute), [1] get_plugin() (dmriprep.config.nipype class method), [1] gradients() (dmriprep.utils.vectors.DiffusionGradientTable property)

H

hires (dmriprep.config.workflow attribute), [1]

I

ignore (dmriprep.config.workflow attribute), [1] init() (dmriprep.config.execution class method), [1] (dmriprep.config.loggers class method), [1] (dmriprep.config.nipype class method), [1] init_dmriprep_wf() (in module dmriprep.workflows.base) init_dwi_derivatives_wf() (in module dmriprep.workflows.dwi.outputs)

init_dwi_preproc_wf() (in module dmriprep.workflows.dwi.base) init_eddy_wf() (in module dmriprep.workflows.dwi.eddy) init_reportlets_wf() (in module dmriprep.workflows.dwi.outputs) init_single_subject_wf() (in module dmriprep.workflows.base) init_spaces() (in module dmriprep.config) interface (dmriprep.config.loggers attribute), [1]

L

layout (dmriprep.config.execution attribute), [1] load() (in module dmriprep.config) log_dir (dmriprep.config.execution attribute), [1]

log_level (dmriprep.config.execution attribute), [1] loggers (class in dmriprep.config), [1] longitudinal (dmriprep.config.workflow attribute), [1] low_mem (dmriprep.config.execution attribute), [1]

M

md_only_boilerplate (dmriprep.config.execution attribute), [1]

median() (in module dmriprep.utils.images) memory_gb (dmriprep.config.nipype attribute), [1]

N

nipype (class in dmriprep.config), [1] nipype_version (dmriprep.config.environment attribute), [1] normalize() (dmriprep.utils.vectors.DiffusionGradientTable method)

normalize_gradients() (in module dmriprep.utils.vectors) normalized() (dmriprep.utils.vectors.DiffusionGradientTable property) notrack (dmriprep.config.execution attribute), [1] nprocs (dmriprep.config.nipype attribute), [1]

O

omp_nthreads (dmriprep.config.nipype attribute), [1] out_path_base (dmriprep.interfaces.DerivativesDataSink attribute) output_dir (dmriprep.config.execution attribute), [1]

output_spaces (dmriprep.config.execution attribute), [1] overcommit_limit (dmriprep.config.environment attribute), [1] overcommit_policy (dmriprep.config.environment attribute), [1]

P

parameterize_dirs (dmriprep.config.nipype attribute), [1] participant_label (dmriprep.config.execution attribute), [1]

plugin (dmriprep.config.nipype attribute), [1] plugin_args (dmriprep.config.nipype attribute), [1] pole() (dmriprep.utils.vectors.DiffusionGradientTable property)

R

rasb_dwi_length_check() (in module dmriprep.utils.vectors) redirect_warnings() (in module dmriprep.config) reorient_rasb() (dmriprep.utils.vectors.DiffusionGradientTable method) reports_only (dmriprep.config.execution attribute), [1]

rescale_b0() (in module dmriprep.utils.images) RescaleB0 (class in dmriprep.interfaces.images) resource_monitor (dmriprep.config.nipype attribute), [1] run_reconall (dmriprep.config.workflow attribute), [1] run_uuid (dmriprep.config.execution attribute), [1]

S

skull_strip_fixed_seed (dmriprep.config.workflow attribute), [1] skull_strip_template (dmriprep.config.workflow attribute), [1] spaces (dmriprep.config.workflow attribute), [1]

stop_on_first_crash (dmriprep.config.nipype attribute), [1] sub_prefix() (in module dmriprep.utils.misc) SubjectSummary (class in dmriprep.interfaces.reports) SummaryInterface (class in dmriprep.interfaces.reports)

T

templateflow_home (dmriprep.config.execution attribute), [1] templateflow_version (dmriprep.config.environment attribute), [1]

to_filename() (dmriprep.utils.vectors.DiffusionGradientTable method) (in module dmriprep.config)

U

use_syn (dmriprep.config.workflow attribute), [1]

utils (dmriprep.config.loggers attribute), [1]

V

validate_input_dir() (in module dmriprep.utils.bids)

version (dmriprep.config.environment attribute), [1]

W

work_dir (dmriprep.config.execution attribute), [1] workflow (class in dmriprep.config), [1] (dmriprep.config.loggers attribute), [1]

write_derivative_description() (in module dmriprep.utils.bids) write_graph (dmriprep.config.execution attribute), [1]