Index

A

AboutSummary (class in smriprep.interfaces.reports)

AggregateSurfaces (class in smriprep.interfaces.surf) apply_lut() (in module smriprep.utils.misc)

B

build_opts() (in module smriprep.cli.run)

build_workflow() (in module smriprep.cli.run)

C

check_deps() (in module smriprep.cli.run) cmdline (smriprep.interfaces.freesurfer.ReconAll property)

collect_derivatives() (in module smriprep.utils.bids) CreateSignedDistanceVolume (class in smriprep.interfaces.workbench)

D

DerivativesDataSink (class in smriprep.interfaces)

F

fetch_template_files() (in module smriprep.interfaces.templateflow) fix_gifti_metadata() (in module smriprep.interfaces.surf)

FixGiftiMetadata (class in smriprep.interfaces.surf) fs_isRunning() (in module smriprep.utils.misc) FSSurfaceReport (class in smriprep.interfaces.reports)

G

get_parser() (in module smriprep.cli.run)

I

init_anat_fit_wf() (in module smriprep.workflows.anatomical) init_anat_preproc_wf() (in module smriprep.workflows.anatomical) init_anat_reports_wf() (in module smriprep.workflows.outputs) init_anat_ribbon_wf() (in module smriprep.workflows.surfaces) init_anat_template_wf() (in module smriprep.workflows.anatomical) init_autorecon_resume_wf() (in module smriprep.workflows.surfaces) init_ds_anat_volumes_wf() (in module smriprep.workflows.outputs) init_ds_dseg_wf() (in module smriprep.workflows.outputs) init_ds_fs_registration_wf() (in module smriprep.workflows.outputs) init_ds_fs_segs_wf() (in module smriprep.workflows.outputs) init_ds_grayord_metrics_wf() (in module smriprep.workflows.outputs) init_ds_mask_wf() (in module smriprep.workflows.outputs) init_ds_surface_metrics_wf() (in module smriprep.workflows.outputs) init_ds_surfaces_wf() (in module smriprep.workflows.outputs) init_ds_template_registration_wf() (in module smriprep.workflows.outputs)

init_ds_template_wf() (in module smriprep.workflows.outputs) init_ds_tpms_wf() (in module smriprep.workflows.outputs) init_fsLR_reg_wf() (in module smriprep.workflows.surfaces) init_gifti_morphometrics_wf() (in module smriprep.workflows.surfaces) init_gifti_surfaces_wf() (in module smriprep.workflows.surfaces) init_hcp_morphometrics_wf() (in module smriprep.workflows.surfaces) init_morph_grayords_wf() (in module smriprep.workflows.surfaces) init_msm_sulc_wf() (in module smriprep.workflows.surfaces) init_refinement_wf() (in module smriprep.workflows.surfaces) init_resample_surfaces_wf() (in module smriprep.workflows.surfaces) init_segs_to_native_wf() (in module smriprep.workflows.surfaces) init_single_subject_wf() (in module smriprep.workflows.base) init_smriprep_wf() (in module smriprep.workflows.base) init_surface_derivatives_wf() (in module smriprep.workflows.surfaces) init_surface_recon_wf() (in module smriprep.workflows.surfaces) init_template_iterator_wf() (in module smriprep.workflows.outputs)

M

main() (in module smriprep.cli.run) make_ribbon() (in module smriprep.interfaces.surf) MakeMidthickness (class in smriprep.interfaces.freesurfer) MakeRibbon (class in smriprep.interfaces.surf) module smriprep.cli smriprep.cli.run smriprep.interfaces smriprep.interfaces.freesurfer smriprep.interfaces.reports smriprep.interfaces.surf smriprep.interfaces.templateflow smriprep.interfaces.workbench smriprep.utils smriprep.utils.bids smriprep.utils.misc smriprep.workflows smriprep.workflows.anatomical smriprep.workflows.base smriprep.workflows.outputs smriprep.workflows.surfaces

MRIsConvertData (class in smriprep.interfaces.freesurfer)

N

normalize_surfs() (in module smriprep.interfaces.surf)

NormalizeSurf (class in smriprep.interfaces.surf)

O

out_path_base (smriprep.interfaces.DerivativesDataSink attribute)

R

ReconAll (class in smriprep.interfaces.freesurfer)

S

smriprep.cli module smriprep.cli.run module smriprep.interfaces module smriprep.interfaces.freesurfer module smriprep.interfaces.reports module smriprep.interfaces.surf module smriprep.interfaces.templateflow module smriprep.interfaces.workbench module smriprep.utils module smriprep.utils.bids module

smriprep.utils.misc module smriprep.workflows module smriprep.workflows.anatomical module smriprep.workflows.base module smriprep.workflows.outputs module smriprep.workflows.surfaces module SubjectSummary (class in smriprep.interfaces.reports) SummaryInterface (class in smriprep.interfaces.reports) SurfaceAffineRegression (class in smriprep.interfaces.workbench) SurfaceApplyAffine (class in smriprep.interfaces.workbench) SurfaceApplyWarpfield (class in smriprep.interfaces.workbench) SurfaceModifySphere (class in smriprep.interfaces.workbench) SurfaceResample (class in smriprep.interfaces.workbench) SurfaceSphereProjectUnproject (class in smriprep.interfaces.workbench)

T

TemplateDesc (class in smriprep.interfaces.templateflow)

TemplateFlowSelect (class in smriprep.interfaces.templateflow)

W

write_bidsignore() (in module smriprep.utils.bids)

write_derivative_description() (in module smriprep.utils.bids)