Index

A

AboutSummary (class in smriprep.interfaces.reports)

apply_lut() (in module smriprep.utils.misc)

B

build_opts() (in module smriprep.cli.run)

build_workflow() (in module smriprep.cli.run)

C

check_deps() (in module smriprep.cli.run) cmdline (smriprep.interfaces.freesurfer.ReconAll property)

collect_derivatives() (in module smriprep.utils.bids) CreateSignedDistanceVolume (class in smriprep.interfaces.workbench)

D

DerivativesDataSink (class in smriprep.interfaces)

F

fetch_template_files() (in module smriprep.interfaces.templateflow)

fs_isRunning() (in module smriprep.utils.misc) FSSurfaceReport (class in smriprep.interfaces.reports)

G

get_parser() (in module smriprep.cli.run)

I

init_anat_reports_wf() (in module smriprep.workflows.outputs) init_ds_anat_volumes_wf() (in module smriprep.workflows.outputs) init_ds_dseg_wf() (in module smriprep.workflows.outputs) init_ds_fs_registration_wf() (in module smriprep.workflows.outputs) init_ds_fs_segs_wf() (in module smriprep.workflows.outputs) init_ds_grayord_metrics_wf() (in module smriprep.workflows.outputs)

init_ds_mask_wf() (in module smriprep.workflows.outputs) init_ds_surface_metrics_wf() (in module smriprep.workflows.outputs) init_ds_surfaces_wf() (in module smriprep.workflows.outputs) init_ds_template_registration_wf() (in module smriprep.workflows.outputs) init_ds_template_wf() (in module smriprep.workflows.outputs) init_ds_tpms_wf() (in module smriprep.workflows.outputs) init_template_iterator_wf() (in module smriprep.workflows.outputs)

M

main() (in module smriprep.cli.run) MakeMidthickness (class in smriprep.interfaces.freesurfer) module smriprep.cli smriprep.cli.run smriprep.interfaces smriprep.interfaces.freesurfer smriprep.interfaces.reports smriprep.interfaces.templateflow smriprep.interfaces.workbench smriprep.utils smriprep.utils.bids smriprep.utils.misc smriprep.workflows smriprep.workflows.outputs

MRIsConvertData (class in smriprep.interfaces.freesurfer)

O

out_path_base (smriprep.interfaces.DerivativesDataSink attribute)

R

ReconAll (class in smriprep.interfaces.freesurfer)

S

smriprep.cli module smriprep.cli.run module smriprep.interfaces module smriprep.interfaces.freesurfer module smriprep.interfaces.reports module smriprep.interfaces.templateflow module smriprep.interfaces.workbench module smriprep.utils module

smriprep.utils.bids module smriprep.utils.misc module smriprep.workflows module smriprep.workflows.outputs module SubjectSummary (class in smriprep.interfaces.reports) SummaryInterface (class in smriprep.interfaces.reports) SurfaceAffineRegression (class in smriprep.interfaces.workbench) SurfaceApplyAffine (class in smriprep.interfaces.workbench) SurfaceApplyWarpfield (class in smriprep.interfaces.workbench) SurfaceModifySphere (class in smriprep.interfaces.workbench) SurfaceResample (class in smriprep.interfaces.workbench) SurfaceSphereProjectUnproject (class in smriprep.interfaces.workbench)

T

TemplateDesc (class in smriprep.interfaces.templateflow)

TemplateFlowSelect (class in smriprep.interfaces.templateflow)

W

write_bidsignore() (in module smriprep.utils.bids)

write_derivative_description() (in module smriprep.utils.bids)