Index

A

AboutSummary (class in smriprep.interfaces.reports)

apply_lut() (in module smriprep.utils.misc)

B

build_opts() (in module smriprep.cli.run)

build_workflow() (in module smriprep.cli.run)

C

check_deps() (in module smriprep.cli.run)

cmdline (smriprep.interfaces.freesurfer.ReconAll property) collect_derivatives() (in module smriprep.utils.bids)

D

DerivativesDataSink (class in smriprep.interfaces)

F

fetch_template_files() (in module smriprep.interfaces.templateflow)

fs_isRunning() (in module smriprep.utils.misc) FSSurfaceReport (class in smriprep.interfaces.reports)

G

get_parser() (in module smriprep.cli.run)

I

init_anat_reports_wf() (in module smriprep.workflows.outputs) init_ds_anat_volumes_wf() (in module smriprep.workflows.outputs) init_ds_dseg_wf() (in module smriprep.workflows.outputs) init_ds_fs_registration_wf() (in module smriprep.workflows.outputs) init_ds_fs_segs_wf() (in module smriprep.workflows.outputs) init_ds_grayord_metrics_wf() (in module smriprep.workflows.outputs)

init_ds_mask_wf() (in module smriprep.workflows.outputs) init_ds_surface_metrics_wf() (in module smriprep.workflows.outputs) init_ds_surfaces_wf() (in module smriprep.workflows.outputs) init_ds_template_registration_wf() (in module smriprep.workflows.outputs) init_ds_template_wf() (in module smriprep.workflows.outputs) init_ds_tpms_wf() (in module smriprep.workflows.outputs) init_template_iterator_wf() (in module smriprep.workflows.outputs)

M

main() (in module smriprep.cli.run) MakeMidthickness (class in smriprep.interfaces.freesurfer) module smriprep.cli smriprep.cli.run smriprep.interfaces smriprep.interfaces.freesurfer smriprep.interfaces.reports smriprep.interfaces.templateflow smriprep.utils smriprep.utils.bids smriprep.utils.misc smriprep.workflows smriprep.workflows.outputs

MRIsConvertData (class in smriprep.interfaces.freesurfer)

O

out_path_base (smriprep.interfaces.DerivativesDataSink attribute)

R

ReconAll (class in smriprep.interfaces.freesurfer)

S

smriprep.cli module smriprep.cli.run module smriprep.interfaces module smriprep.interfaces.freesurfer module smriprep.interfaces.reports module smriprep.interfaces.templateflow module

smriprep.utils module smriprep.utils.bids module smriprep.utils.misc module smriprep.workflows module smriprep.workflows.outputs module SubjectSummary (class in smriprep.interfaces.reports) SummaryInterface (class in smriprep.interfaces.reports)

T

TemplateDesc (class in smriprep.interfaces.templateflow)

TemplateFlowSelect (class in smriprep.interfaces.templateflow)

W

write_bidsignore() (in module smriprep.utils.bids)

write_derivative_description() (in module smriprep.utils.bids)