Index

A

AboutSummary (class in smriprep.interfaces.reports)

AggregateSurfaces (class in smriprep.interfaces.surf) apply_lut() (in module smriprep.utils.misc)

B

build_opts() (in module smriprep.cli.run)

build_workflow() (in module smriprep.cli.run)

C

check_deps() (in module smriprep.cli.run) cmdline (smriprep.interfaces.freesurfer.ReconAll property)

collect_derivatives() (in module smriprep.utils.bids) CreateSignedDistanceVolume (class in smriprep.interfaces.workbench)

D

DerivativesDataSink (class in smriprep.interfaces)

F

fetch_template_files() (in module smriprep.interfaces.templateflow) fix_gifti_metadata() (in module smriprep.interfaces.surf)

FixGiftiMetadata (class in smriprep.interfaces.surf) fs_isRunning() (in module smriprep.utils.misc) FSSurfaceReport (class in smriprep.interfaces.reports)

G

GenerateDScalar (class in smriprep.interfaces.cifti)

get_parser() (in module smriprep.cli.run)

I

init_anat_fit_wf() (in module smriprep.workflows.anatomical) init_anat_preproc_wf() (in module smriprep.workflows.anatomical) init_anat_reports_wf() (in module smriprep.workflows.outputs) init_anat_ribbon_wf() (in module smriprep.workflows.surfaces) init_anat_second_derivatives_wf() (in module smriprep.workflows.outputs) init_anat_template_wf() (in module smriprep.workflows.anatomical) init_autorecon_resume_wf() (in module smriprep.workflows.surfaces) init_ds_anat_volumes_wf() (in module smriprep.workflows.outputs) init_ds_dseg_wf() (in module smriprep.workflows.outputs) init_ds_fs_registration_wf() (in module smriprep.workflows.outputs) init_ds_grayord_metrics_wf() (in module smriprep.workflows.outputs) init_ds_mask_wf() (in module smriprep.workflows.outputs) init_ds_surface_metrics_wf() (in module smriprep.workflows.outputs) init_ds_surfaces_wf() (in module smriprep.workflows.outputs) init_ds_template_registration_wf() (in module smriprep.workflows.outputs) init_ds_template_wf() (in module smriprep.workflows.outputs)

init_ds_tpms_wf() (in module smriprep.workflows.outputs) init_fsLR_reg_wf() (in module smriprep.workflows.surfaces) init_gifti_morphometrics_wf() (in module smriprep.workflows.surfaces) init_gifti_surfaces_wf() (in module smriprep.workflows.surfaces) init_hcp_morphometrics_wf() (in module smriprep.workflows.surfaces) init_morph_grayords_wf() (in module smriprep.workflows.surfaces) init_msm_sulc_wf() (in module smriprep.workflows.surfaces) init_refinement_wf() (in module smriprep.workflows.surfaces) init_register_template_wf() (in module smriprep.workflows.fit.registration) init_resample_midthickness_wf() (in module smriprep.workflows.surfaces) init_segs_to_native_wf() (in module smriprep.workflows.surfaces) init_single_subject_wf() (in module smriprep.workflows.base) init_smriprep_wf() (in module smriprep.workflows.base) init_surface_derivatives_wf() (in module smriprep.workflows.surfaces) init_surface_recon_wf() (in module smriprep.workflows.surfaces) init_template_iterator_wf() (in module smriprep.workflows.outputs)

M

main() (in module smriprep.cli.run) make_ribbon() (in module smriprep.interfaces.surf) MakeMidthickness (class in smriprep.interfaces.freesurfer) MakeRibbon (class in smriprep.interfaces.surf) MetricMath (class in smriprep.interfaces.gifti) module smriprep.cli smriprep.cli.run smriprep.interfaces smriprep.interfaces.cifti smriprep.interfaces.freesurfer smriprep.interfaces.gifti smriprep.interfaces.msm smriprep.interfaces.reports smriprep.interfaces.surf smriprep.interfaces.templateflow smriprep.interfaces.workbench smriprep.utils smriprep.utils.bids smriprep.utils.misc smriprep.workflows smriprep.workflows.anatomical smriprep.workflows.base smriprep.workflows.fit smriprep.workflows.fit.registration smriprep.workflows.outputs smriprep.workflows.surfaces

MRIsConvertData (class in smriprep.interfaces.freesurfer) MSM (class in smriprep.interfaces.msm)

N

normalize_surfs() (in module smriprep.interfaces.surf)

NormalizeSurf (class in smriprep.interfaces.surf)

O

out_path_base (smriprep.interfaces.DerivativesDataSink attribute)

R

ReconAll (class in smriprep.interfaces.freesurfer)

S

smriprep.cli module smriprep.cli.run module smriprep.interfaces module smriprep.interfaces.cifti module smriprep.interfaces.freesurfer module smriprep.interfaces.gifti module smriprep.interfaces.msm module smriprep.interfaces.reports module smriprep.interfaces.surf module smriprep.interfaces.templateflow module smriprep.interfaces.workbench module smriprep.utils module smriprep.utils.bids module

smriprep.utils.misc module smriprep.workflows module smriprep.workflows.anatomical module smriprep.workflows.base module smriprep.workflows.fit module smriprep.workflows.fit.registration module smriprep.workflows.outputs module smriprep.workflows.surfaces module SubjectSummary (class in smriprep.interfaces.reports) SummaryInterface (class in smriprep.interfaces.reports) SurfaceAffineRegression (class in smriprep.interfaces.workbench) SurfaceApplyAffine (class in smriprep.interfaces.workbench) SurfaceApplyWarpfield (class in smriprep.interfaces.workbench) SurfaceModifySphere (class in smriprep.interfaces.workbench) SurfaceResample (class in smriprep.interfaces.workbench) SurfaceSphereProjectUnproject (class in smriprep.interfaces.workbench)

T

TemplateDesc (class in smriprep.interfaces.templateflow)

TemplateFlowSelect (class in smriprep.interfaces.templateflow)

W

write_bidsignore() (in module smriprep.utils.bids)

write_derivative_description() (in module smriprep.utils.bids)