What’s new?¶

1.12.1 (December 12, 2024)¶

Patch release that adds a new input to SpatialNormalization, but remains backwards compatible.

ENH: Allow adjusting histogram matching of configuration files (#911)

1.12.0 (December 05, 2024)¶

New minor release in the 1.12.x series.

This release includes support for Python 3.13, Numpy 2.0 and Nipype 1.9.

Note that using Python 3.13 requires building traits from the development branch.

FIX: Pandas deprecations (#906)
FIX: Numpy 2 compatibility (#905)
FIX: Check 2D spaces against list from templateflow (#888)
ENH: Add boldmap suffix to filename patterns. (#899)
ENH: Add dir entity to T2starmap pattern. (#898)
TEST: CIFTI2 expected checksum has changed (#895)
STY: Replace black+flake8 with ruff, add pre-commit (#904)
STY: use f-string within normalization interface (#892) MNT: Enable 3.13 tests (#909)
MNT: Switch to tox for testing and CI (#900)
MNT: Drop Python 3.8, update dependencies (#896)
CI: Fix get_data job on CircleCI (#897)

1.11.0 (July 31, 2024)¶

New minor release to start the 1.11.x series.

The major changes include: - a deprecation to T1w-only based template processing - addition of a new dependency acres for accessing package data

However, this is still backwards compatible with the 1.10.x series.

MAINT: Depend on acres for data access
ENH: Add PrepareDerivative/SaveDerivative interfaces (#885)
ENH: Make template dimensions support T2w as well (#879)
ENH: Modify FSSource to output T2 (#868)
FIX: Set cal_max in the NIfTI header for visualization after IntensityClip (#878)
FIX: Remove accidental MRIQC dependency, allow app config to be passed to workflow plugin (#876)
TEST: Fix plugin invocation, use an initializer that can be verified (#880)

1.10.2 (June 10, 2024)¶

Bug-fix release in the 1.10.x series

ENH: Modify FSSource to output T2 (#868)
STY: Apply ruff/flake8-implicit-str-concat rule ISC001 (#870)
STY: Remove extraneous quotes (#859)
STY: Apply assorted ruff/refurb rules (#867)
MNT: update vendored docs files (#834)
MNT: Fix deprecation error in CI (#866)

1.10.1 (March 06, 2024)¶

Bug-fix release in the 1.10.x series

ENH: Allow alternative extensions when creating a BIDS skeleton (#858)
ENH: Parsing for space+cohort structure (#857)

1.10.0 (December 13, 2023)¶

New feature release in the 1.10.x series.

This release has several improvements targeting ASLPrep and MRIQC, particularly around BIDS tooling and workflow plugins. We also drop our use of Convert3D in favor of nitransforms, allowing downstream projects to remove this non-Python dependency as needed.

Some fixes change workflow structure, so please test before upgrading.

FIX: Copy header to ensure mask is really aligned (#844)
FIX: Correctly use ignore_initial_volumes in ConfoundsCorrelationPlot (#846)
FIX: Add DWI to the default queries of BIDS querying (#833)
ENH: Add ignore_initial_volumes param to ConfoundsCorrelationPlot (#843)
ENH: Add MRIQC’s custom multiproc runner that allows passing the pool (#841)
ENH: Upstream debugging hook from MRIQC (#842)
ENH: Add ASL support in BIDS utilities (#839)
ENH: Add hemi entity to transform path patterns (#832)
RF: Replace Convert3d with nitransforms in MCFLIRT2ITK (#835)
DOC: fix typo in refmap.py (#837)
STY: Assorted refurb suggestions (#831)
MNT: http:// → https:// (#828)
CI: Bump actions/setup-python from 4 to 5 (#845)
CI: Bump conda-incubator/setup-miniconda from 2 to 3 (#840)

1.9.0 (October 12, 2023)¶

New feature release in the 1.9.x series.

This release should be mostly compatible with 1.8.x. The most significant addition is the niworkflows.data.Loader, which provides some wrapping around importlib.resources to make accessing resources more convenient.

FIX: Build config and CI (#826)
FIX: Compatibility with matplotlib 3.8.0 (#825)
FIX: Save boldrefs as float32 (#821)
FIX: Replace deprecated Matplotlib functionality (#820)
FIX: Test names of paths when calling path.iterdir() (#818)
ENH: Add PET support to niworkflows (#823)
ENH: Add data loader class, install at root and data modules (#816)
MNT: Pyupgrade suggestions (#817)
MNT: update vendored docs files (#813)
CI: Bump actions/checkout from 3 to 4 (#824)

1.8.1 (June 29, 2023)¶

Patch release in the 1.8.x series.

This release includes a fix to CIFTI volume structure indices, and adds additional Workbench interfaces.

ENH: Port GIFTI/CIFTI interfaces from fMRIPrep (#811)
FIX: Generate CIFTI volume structure indices in column-major order (#815)

1.8.0 (June 01, 2023)¶

New feature release in the 1.8.x series.

This includes only bug-fixes, however the reselection of “white” surfaces as the default gray/white boundary instead of “smoothwm” justifies a minor release.

FIX: Add desc entity to all path patterns (#808)
FIX: Inspect if template has resolution instead of assuming (#803)
FIX: Add missing dir-{direction} pattern for data sinking DWI reportlets (#807)
FIX: Move from smoothwm to white (#806)
FIX: Add option to bypass twopass in AFNI RobustAverage (#801)
FIX: Use len(segments) to avoid nsegments becoming wrong (#795)
MNT: Add PendingDeprecationWarning to nireports modules (#810)
MNT: Configure dependabot to upgrade actions (#796)
MNT: Drop Python 3.7 support, test 3.11 (#793)
MNT: Update build system and CI invocations (#792)
CI: Do not run scheduled builds on forks (#800)
CI: Bump codespell-project/actions-codespell from 1 to 2 (#805)
CI: Bump actions/checkout from 2 to 3 (#797)
CI: Build and upload wheels (#791)